Index

A

absolute_error() (deconvolution.Evaluation static method) add_boundary() (in module segmentation)

archive_assign_type_out_gp() (in module deconvolution) assign_type_out() (in module deconvolution) assign_type_spot() (in module deconvolution)

C

cell_boundary() (in module segmentation) change_predict_defaults() (in module segmentation) construct_sc_ref() (in module sc_reference)

correct_fraction() (deconvolution.Evaluation static method) correlation() (deconvolution.Evaluation static method) cosine() (deconvolution.Evaluation static method)

D

decomposition() (in module deconvolution) deconvolute() (in module deconvolution)

deconvolution module

E

estimation_proportion() (in module deconvolution)

evaluate_metric() (deconvolution.Evaluation method) Evaluation (class in deconvolution)

I

initialization() (in module sc_reference)

J

JSD() (deconvolution.Evaluation static method)

M

marker_selection() (in module sc_reference) module deconvolution plot sc_reference segmentation

N

n_cell_in_spot() (segmentation.Segmentation static method)

P

plot module plot() (plot.Plot_Visium method) (plot.Plot_Xenium method) (segmentation.Segmentation method) plot_heatmap() (in module sc_reference) plot_legend() (plot.Plot_Visium method)

plot_metric() (deconvolution.Evaluation method) plot_metric_all() (deconvolution.Evaluation method) plot_metric_spot_type() (deconvolution.Evaluation method) plot_proportion() (in module deconvolution) plot_sc_ref() (in module sc_reference) Plot_Visium (class in plot) Plot_Xenium (class in plot) proportion_to_count() (in module deconvolution)

S

save_results() (segmentation.Segmentation method) sc_reference module segment_nucleus() (segmentation.Segmentation method) segmentation module

Segmentation (class in segmentation) simulation() (in module deconvolution) square_error() (deconvolution.Evaluation static method) stardist_2D_versatile_he() (segmentation.Segmentation static method)