Installation

To install Spotiphy, we recommend creating a separate conda environment. This helps manage dependencies and avoid conflicts with other packages.

conda create -n Spotiphy-env python=3.9
conda activate Spotiphy-env

Dependencies

Spotiphy is built on top of PyTorch and TensorFlow <https://www.tensorflow.org/>. These must be installed manually before installing Spotiphy.

# macOS with Apple Silicon
conda install -c apple tensorflow-deps -y
pip install tensorflow-macos==2.16.2 tensorflow-metal==1.2.0
pip install torch

# Windows
pip install torch  # Or follow https://pytorch.org/get-started/locally/ to enable CUDA support
pip install tensorflow==2.16.2

Spotiphy Installation

After installing the dependencies, Spotiphy itself can be installed in one of two ways:

From GitHub: Installs the latest development version directly from the source code.
```
pip install git+https://github.com/jyyulab/Spotiphy.git
```
From PyPI: Installs the stable release from the Python Package Index (recommended for most users).
```
pip install spotiphy==0.3.0
```

Verification

To test the installation, try importing Spotiphy in Python:

import spotiphy