Installation

Install blat

You can install blat from conda:

conda install -c bioconda blat
which blat

If you are running ScreenBEAM on local node, please make sure your blat has been linked to your local bin.

Install ScreenBEAM2 package

Install R package from source

In your R session, please run

install.packages(path_to_file, type="source",repo=NULL)

or

devtools::install_local(path_to_file)

R package from github

devtools::install(pkg='.', dependencies = T)
devtools::install_deps(pkg = ".", dependencies = TRUE) ## Install package dependencies if needed.