get.combined.network — get.combined.network • SINBA

This function will merge two networks into one network prepared for SINBA activity calculation.

Usage

get.combined.network(network1 = NULL, network2 = NULL)

Arguments

network1: network object, which is generated by get.single.network contaning network_data. network_dat is a data.frame, contains all the information of the network SJARACNe constructed.network_dat is a data.frame, contains all the information of the network SJARACNe constructed and must contain four columns with column names "source" (driver) and "target" (target genes), "MI" (mutual information) and "spearman" (spearman correlation coefficient).
network2: network object, which is generated by get.single.network contaning network_data. network_dat is a data.frame, contains all the information of the network SJARACNe constructed and must contain four columns with column names "source" (driver) and "target" (target genes), "MI" (mutual information) and "spearman" (spearman correlation coefficient).

Examples

out_net_file1<-"path1_to_network_file/consensus_network_ncol_.txt"
out_net_file2<-"path2_to_network_file/consensus_network_ncol_.txt"
net1  <- get.single.network(network_file=out_net_file1)
#> Error in get.single.network(network_file = out_net_file1): could not find function "get.single.network"
net2  <- get.single.network(network_file=out_net_file2)
#> Error in get.single.network(network_file = out_net_file2): could not find function "get.single.network"
combined.network<-get.combined.network(network1=net1,network2=net2)
#> Error in get.combined.network(network1 = net1, network2 = net2): could not find function "get.combined.network"
if (FALSE) { # \dontrun{
} # }