SINBA.analysis.dir.create

SINBA.analysis.dir.create is used to help users create an organized working directory for SINBA analysis.However, it is not essential for the analysis.It creates a hierarchcial working directory and returns a list contains this directory information.

This function needs users to define the main working directory and the project's name. It creates a main working directory with a subdirectory of the project. It also automatically creates three subfolders (QC, DATA and PLOT) within the project folder.

QC/, storing Quality Control related plots; DATA/, saving data in RData format; PLOT/, storing the plot files generated during the analysis

Usage

SINBA.analysis.dir.create(
  project_main_dir = NULL,
  project_name = NULL,
  tf.network.file = NULL,
  sig.network.file = NULL
)

Arguments

project_main_dir

character, name or absolute path of the main working directory.

project_name

character, name of the project folder.

tf.network.file

character, the path of the TF network file.

sig.network.file

character, the path of the SIG network file.

Examples

if (FALSE) { # \dontrun{
# Creating a main working directory under the current working directory by folder name
SINBA.par <- SINBA.analysis.dir.create("MyMainDir","MyProject")
} # }